Research Output 1899 2020

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2019

Assembling the human resectosome on DNA curtains

Soniat, M. M., Myler, L. R. & Finkelstein, I. J., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 225-244 20 p. (Methods in Molecular Biology; vol. 1999).

Research output: Chapter in Book/Report/Conference proceedingChapter

DNA
Microfluidics
Double-Stranded DNA Breaks
Homologous Recombination
Maintenance

Desiccation tolerance assays for acinetobacter baumannii

Wang, X., Trent, M. S. & Davies, B. W., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 189-194 6 p. (Methods in Molecular Biology; vol. 1946).

Research output: Chapter in Book/Report/Conference proceedingChapter

Acinetobacter baumannii
Desiccation
Delivery of Health Care
Equipment and Supplies
1 Citation (Scopus)

Isolation of lipid cell envelope components from acinetobacter baumannii

Powers, M. J., Herrera, C. M., Tucker, A. T., Davies, B. W. & Trent, M. S., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 233-252 20 p. (Methods in Molecular Biology; vol. 1946).

Research output: Chapter in Book/Report/Conference proceedingChapter

Acinetobacter baumannii
Acinetobacter
Cellular Structures
Lipids
Microbiological Techniques

Purification and biophysical characterization of the mre11-Rad50-Nbs1 complex

Myler, L. R., Soniat, M. M., Zhang, X., Deshpande, R. A., Paull, T. & Finkelstein, I. J., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 269-287 19 p. (Methods in Molecular Biology; vol. 2004).

Research output: Chapter in Book/Report/Conference proceedingChapter

Biophysics
Exonucleases
Double-Stranded DNA Breaks
DNA
Telomere

RecET-mediated recombineering in acinetobacter baumannii

Tucker, A. T., Powers, M. J., Trent, M. S. & Davies, B. W., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 107-113 7 p. (Methods in Molecular Biology; vol. 1946).

Research output: Chapter in Book/Report/Conference proceedingChapter

Acinetobacter baumannii
Genetic Engineering
Genetic Recombination
Genome
Desiccation
1 Citation (Scopus)

Sortase-mediated fluorescent labeling of CRISPR complexes

Dillard, K. E., Schaub, J. M., Brown, M. W., Saifuddin, F. A., Xiao, Y., Hernandez, E., Dahlhauser, S. D., Anslyn, E. V., Ke, A. & Finkelstein, I. J., Jan 1 2019, Methods in Enzymology. Bailey, S. (ed.). Academic Press Inc., p. 43-59 17 p. (Methods in Enzymology; vol. 616).

Research output: Chapter in Book/Report/Conference proceedingChapter

Clustered Regularly Interspaced Short Palindromic Repeats
Labeling
Proteins
Imaging techniques
Molecules
2018
2 Citations (Scopus)

Scalable in vitro proteasome activity assay

Singh Gautam, A. K., Martinez-Fonts, K. & Matouschek, A. T., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 321-341 21 p. (Methods in Molecular Biology; vol. 1844).

Research output: Chapter in Book/Report/Conference proceedingChapter

Proteasome Endopeptidase Complex
In Vitro Techniques
Proteins
2017

Inserting Extrahelical Structures into Long DNA Substrates for Single-Molecule Studies of DNA Mismatch Repair

Brown, M. W., de la Torre, A. & Finkelstein, I. J., Jan 1 2017, Methods in Enzymology. Academic Press Inc., p. 221-238 18 p. (Methods in Enzymology; vol. 582).

Research output: Chapter in Book/Report/Conference proceedingChapter

DNA Mismatch Repair
Repair
Molecules
DNA
Substrates
8 Citations (Scopus)

Next-Generation DNA Curtains for Single-Molecule Studies of Homologous Recombination

Soniat, M. M., Myler, L. R., Schaub, J. M., Kim, Y., Gallardo, I. F. & Finkelstein, I. J., Jan 1 2017, Methods in Enzymology. Academic Press Inc., p. 259-281 23 p. (Methods in Enzymology; vol. 592).

Research output: Chapter in Book/Report/Conference proceedingChapter

Homologous Recombination
Molecules
DNA
Facilitated Diffusion
Imaging techniques
4 Citations (Scopus)

Origins: A brief account of the ancestry of circadian biology

Schwartz, W. J. & Daan, S., Jan 1 2017, Biological Timekeeping: Clocks, Rhythms and Behaviour. Springer (India) Private Ltd., p. 3-22 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Metaphor
Circadian Rhythm
molecular genetics
circadian rhythm
genetic improvement
2016

A nonparametric bayesian model for nested clustering

Lee, J., Mueller, P., Zhu, Y. & Ji, Y., Jan 1 2016, Methods in Molecular Biology. Humana Press Inc., p. 129-141 13 p. (Methods in Molecular Biology; vol. 1362).

Research output: Chapter in Book/Report/Conference proceedingChapter

Cluster Analysis
Proteins
Activation Analysis

Assessment of body composition and fat distribution in infants, children, and adolescents

Widen, E. M. & Gallagher, D., Oct 14 2016, Childhood Obesity: Causes, Consequences, and Intervention Approaches. CRC Press, p. 45-55 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Body Fat Distribution
Body Composition
5 Citations (Scopus)

Bin-based estimation of the amount of effort for embedded software development projects with support vector machines

Iwata, K., Liebman, E., Stone, P., Nakashima, T., Anan, Y. & Ishii, N., Jan 1 2016, Studies in Computational Intelligence. Springer Verlag, p. 157-169 13 p. (Studies in Computational Intelligence; vol. 614).

Research output: Chapter in Book/Report/Conference proceedingChapter

Embedded software
Bins
Support vector machines
Software engineering
Experiments
2 Citations (Scopus)

CHAPTER 2: 11B NMR and its uses in structural characterization of boronic acids and boronate esters

Metola, P., Chapin, B. M. & Anslyn, E. V., Jan 1 2016, Porous Polymers: Design, Synthesis and Applications. Fossey, J. S., James, T. D. & Li, M. (eds.). 16 ed. Royal Society of Chemistry, p. 44-60 17 p. (Monographs in Supramolecular Chemistry; vol. 2016-January, no. 16).

Research output: Chapter in Book/Report/Conference proceedingChapter

Boronic Acids
Boron
Chemical shift
Esters
Nuclear magnetic resonance
2 Citations (Scopus)

Control of Migration during Intrathymic T Cell Development

Ehrlich, L. I. R., Apr 27 2016, Development and Phylogeny of the Immune System. Elsevier Inc., Vol. 1. p. 249-262 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Thymocytes
T-Lymphocytes
Stromal Cells
Central Tolerance
Cell Lineage

Gas-phase hydrogen/ deuterium exchange in quadrupole-ion traps

Chipuk, J. E. & Brodbelt, J. S., Apr 19 2016, Applications of Ion Trapping Devices. CRC Press, Vol. 5. p. 35-57 23 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Deuterium
Hydrogen
Ion exchange
Gases
Ions
24 Citations (Scopus)

Genes and Alcohol Consumption: Studies with Mutant Mice

Mayfield, J., Arends, M. A., Harris, R. A. & Blednov, Y. A., Jan 1 2016, International Review of Neurobiology. Academic Press Inc., p. 293-355 63 p. (International Review of Neurobiology; vol. 126).

Research output: Chapter in Book/Report/Conference proceedingChapter

Alcohol Drinking
Drinking
Self Administration
Genes
Alcohols

High school mathematics in Texas: Freedom and shackles

Marder, M. P., Jan 1 2016, Education Policy Perils: Tackling Tough Issues. Taylor and Francis, p. 134-156 23 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

school graduation
mathematics
science
art studies
school
2015
2 Citations (Scopus)

A Bayesian nonparametric causal model for regression discontinuity designs

Karabatsos, G. & Walker, S. G., Jan 1 2015, Nonparametric Bayesian Inference in Biostatistics. Springer International Publishing, p. 403-422 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Causal Model
Bayesian Nonparametrics
Nonparametric Model
Linear Models
Discontinuity
14 Citations (Scopus)

An observational guide to identifying pseudobulges and classical bulges in disc galaxies

Fisher, D. B. & Drory, N., Oct 25 2015, Galactic Bulges. Springer International Publishing, Vol. 418. p. 41-75 35 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

disk galaxies
lists
star formation
kinematics
gases
24 Citations (Scopus)

Autonomous intersection management for semiautonomous vehicles

Au, T. C., Zhang, S. & Stone, P., Aug 20 2015, Routledge Handbook of Transportation. Taylor and Francis Inc., p. 88-104 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

management

Bayesian inference for latent stepping and ramping models of spike train data

Latimer, K. W., Huk, A. C. & Pillow, J. W., Jan 1 2015, Advanced State Space Methods for Neural and Clinical Data. Cambridge University Press, p. 160-185 26 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Decision making
Brain
Neurons
Animals
State space methods
1 Citation (Scopus)

Bayesian nonparametric models

Müller, P. & Mitra, R., Jan 1 2015, Nonparametric Bayesian Inference in Biostatistics. Springer International Publishing, p. 3-14 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biostatistics
Bayesian Nonparametrics
Dirichlet Process
Nonparametric Model
Bayesian Model
4 Citations (Scopus)

Bayesian nonparametrics for missing data in longitudinal clinical trials

Daniels, M. J. & Linero, A. R., Jan 1 2015, Nonparametric Bayesian Inference in Biostatistics. Springer International Publishing, p. 423-446 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Bayesian Nonparametrics
Bayes Theorem
Missing Data
Clinical Trials
Sensitivity analysis

Biomarker-driven adaptive design

Xu, Y., Ji, Y. & Müller, P., Jan 1 2015, Nonparametric Bayesian Inference in Biostatistics. Springer International Publishing, p. 311-326 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Adaptive Design
Biomarkers
biomarkers
Bayesian Model
Model-based
4 Citations (Scopus)

Centric and Araphid Diatoms

Kociolek, J. P., Theriot, E. C., Williams, D. M., Julius, M., Stoermer, E. F. & Kingston, J. C., Jun 26 2015, Freshwater Algae of North America: Ecology and Classification. Elsevier Inc., p. 653-708 56 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Diatoms
Bacillariophyceae
Fresh Water
algae
diatom
2 Citations (Scopus)

CHAPTER 7: Metal-organic frameworks as chemical sensors

Waggoner, N. W., Bohnsack, A. M. & Humphrey, S. M., Jan 1 2015, RSC Smart Materials. Hardy, J. G. & Schacher, F. H. (eds.). 15 ed. Royal Society of Chemistry, p. 192-245 54 p. (RSC Smart Materials; vol. 2015-January, no. 15).

Research output: Chapter in Book/Report/Conference proceedingChapter

Chemical sensors
Metals
Microporous materials
Food safety
Lanthanoid Series Elements
5 Citations (Scopus)

Design, synthesis, and application of spinach molecular beacons triggered by strand displacement

Bhadra, S. & Ellington, A. D., 2015, Methods in Enzymology. Academic Press Inc., p. 215-249 35 p. (Methods in Enzymology; vol. 550).

Research output: Chapter in Book/Report/Conference proceedingChapter

Spinacia oleracea
Amplification
Conformations
Nucleic acid sequences
Nucleotide Aptamers
15 Citations (Scopus)

Elliptical galaxies and bulges of disc galaxies: Summary of progress and outstanding issues

Kormendy, J., Oct 25 2015, Galactic Bulges. Springer International Publishing, Vol. 418. p. 431-477 47 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

disk galaxies
elliptical galaxies
galaxies
star formation
ring structures

Estimating latent cell subpopulations with Bayesian feature allocation models

Ji, Y., Sengupta, S., Lee, J., Müller, P. & Gulukota, K., Jan 1 2015, Nonparametric Bayesian Inference in Biostatistics. Springer International Publishing, p. 77-96 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Tumors
Tumor
neoplasms
Cell
mutation
2 Citations (Scopus)

Intentional photos from an unintentional photographer: Detecting snap points in egocentric video with aweb photo prior

Xiong, B. & Grauman, K., Jan 1 2015, Mobile Cloud Visual Media Computing: From Interaction to Service. Springer International Publishing, p. 85-111 27 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Cameras
Mobile robots
Chemical analysis
Object detection

Metabolomics, Bioactives, and Cancer

Sweeney, S. R., Digiovanni, J. & Tiziani, S., Oct 5 2015, Genomics, Proteomics and Metabolomics in Nutraceuticals and Functional Foods: Second Edition. Wiley Blackwell, p. 365-378 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Metabolomics
metabolomics
neoplasms
Research
Neoplasms

Motion Perception

Huk, A. C. & Joo, S. J., Feb 14 2015, Anatomy and Physiology, Systems. Elsevier Inc., Vol. 2. p. 507-510 4 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Motion Perception

Neuroimaging of Economic Decision-Making

Malecek, N. J. & Schonberg, T., Feb 14 2015, Social Cognitive Neuroscience, Cognitive Neuroscience, Clinical Brain Mapping. Elsevier Inc., Vol. 3. p. 409-415 7 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Neuroimaging
Decision Making
Economics
4 Citations (Scopus)

Profinite properties of discrete groups

Reid, A. W., Jan 1 2015, Groups St Andrews 2013. Cambridge University Press, p. 73-104 32 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Discrete Group
Residually Finite
Completion
Profinite Groups
Nilpotent Group
9 Citations (Scopus)

Relationships between adults and parents in Asia

Kim, K., Cheng, Y. P., Zarit, S. H. & Fingerman, K. L., Jan 1 2015, Successful Aging: Asian Perspectives. Springer Netherlands, p. 101-122 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Parent-Child Relations
parent-child relationship
parents
Parents
Social Environment
2 Citations (Scopus)

Spatial species sampling and product partition models

Jo, S., Lee, J., Page, G., Quintana, F., Trippa, L. & Müller, P., Jan 1 2015, Nonparametric Bayesian Inference in Biostatistics. Springer International Publishing, p. 359-376 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Chile
Diagnostic Imaging
Ecology
Epidemiology
Partition
3 Citations (Scopus)

Stability results for the brunn-minkowski inequality

Figalli, A., Jan 1 2015, Colloquium de Giorgi 2013 and 2014. Scuola Normale Superiore, p. 119-127 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Brunn-Minkowski Inequality
Isoperimetric Problem
Convex Geometry
Sumsets
Lebesgue Measure

Studying molecular changes during gravity perception and response in a single cell

Cannon, A. E., Salmi, M. L., Bushart, T. J. & Roux, S. J., May 15 2015, Plant Gravitropism: Methods and Protocols. Springer New York, p. 199-207 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Gravity Sensing
Spores
gravity
spores
Gravitation
5 Citations (Scopus)

System-Wide Monitoring Program of the National Estuarine Research Reserve System: Research and Monitoring to Address Coastal Management Issues

Buskey, E. J., Bundy, M., Ferner, M. C., Porter, D. E., Reay, W. G., Smith, E. & Trueblood, D., Jun 23 2015, Coastal Ocean Observing Systems. Elsevier Inc., p. 392-415 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

coastal zone management
estuarine ecosystem
monitoring
climate change
long-term change
4 Citations (Scopus)

The betalain secondary metabolic network

Hatlestad, G. J. & Lloyd, A. M., Jan 1 2015, Pigments in Fruits and Vegetables. Springer New York, p. 127-140 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Betalains
betalains
Metabolic Networks and Pathways
dihydroxyphenylalanine
Dihydroxyphenylalanine
3 Citations (Scopus)

Vascular Molecular Embryology

Vokes, S. A., Jan 1 2015, PanVascular Medicine, Second Edition. Springer Berlin Heidelberg, p. 27-51 25 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Embryology
Blood Vessels
Genes
Molecular Probes
Cardiovascular system
2014
5 Citations (Scopus)

A class of homothetic forward investment performance processes with non-zero volatility

Nadtochiy, S. & Zariphopoulou, T., Jan 1 2014, Inspired by Finance: The Musiela Festschrift. Springer International Publishing, p. 475-504 30 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Volatility
Factor Models
Ill-posed Problem
Stochastic Model
Closed-form
2 Citations (Scopus)

Alcohol and the Brain: An Epigenetic Viewpoint

Marballi, K., Ponomarev, I., Mayfield, R. D. & Harris, R. A., Jan 1 2014, Neurobiology of Alcohol Dependence. Elsevier Inc., p. 349-358 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Epigenomics
Alcoholism
Alcohols
Brain
Gene Expression
3 Citations (Scopus)

Alcohol and the Nervous System

Messing, R. O., Jan 1 2014, Aminoff's Neurology and General Medicine: Fifth Edition. Elsevier Inc., p. 713-724 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Nervous System
Alcohols
Ethanol
Nervous System Diseases
Alcohol-Related Disorders

Applying Super-Resolution Imaging Techniques to Problems in Single-Molecule SERS

Titus, E. J. & Willets, K. A., Mar 31 2014, Frontiers of Surface-Enhanced Raman Scattering: Single Nanoparticles and Single Cells. Wiley Blackwell, Vol. 9781118359020. p. 193-217 25 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Raman scattering
Imaging techniques
Molecules
Optical microscopy

Beneficial effects of a higher-protein breakfast on the appetitive, hormonal, and neural signals controlling energy intake regulation in overweight/obese, 'breakfast-skipping, late-adolescent girls

Leidy, H., Ortinau, L. C., Douglas, S. M. & Hoertel, H. A., Jan 1 2014, Nutrition and Growth: Yearbook 2014. S. Karger AG, p. 14-15 2 p. (World Review of Nutrition and Dietetics; vol. 109).

Research output: Chapter in Book/Report/Conference proceedingChapter

Breakfast
breakfast
Energy Intake
energy intake
Proteins
14 Citations (Scopus)

Cerebellar mechanisms of learning and plasticity revealed by delay eyelid conditioning

Mauk, M. D., Li, W., Khilkevich, A. & Halverson, H., Jan 1 2014, International Review of Neurobiology. Academic Press Inc., p. 21-37 17 p. (International Review of Neurobiology; vol. 117).

Research output: Chapter in Book/Report/Conference proceedingChapter

Eyelid Conditioning
Cerebellum
Learning
Smooth Pursuit
Vestibulo-Ocular Reflex
3 Citations (Scopus)

Decremental all-pairs ALL shortest paths and betweenness centrality

Nasre, M., Pontecorvi, M. & Ramachandran, V., Jan 1 2014, Algorithms and Computation - 25th International Symposium, ISAAC 2014, Proceedings. Ahn, H-K. & Shin, C-S. (eds.). Springer Verlag, p. 766-778 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8889).

Research output: Chapter in Book/Report/Conference proceedingChapter

Betweenness
Centrality
Shortest path
Vertex of a graph
Graph in graph theory

High-throughput RNA-Seq for allelic or locus-specific expression analysis in Arabidopsis-related species, hybrids, and allotetraploids

Ng, D. W. K., Shi, X., Nah, G. & Chen, Z. J., Jan 1 2014, Methods in Molecular Biology. p. 33-48 16 p. (Methods in Molecular Biology; vol. 1112).

Research output: Chapter in Book/Report/Conference proceedingChapter

RNA Sequence Analysis
High-Throughput Nucleotide Sequencing
Arabidopsis
Transcriptome
Gene Expression