Research Output 1953 2019

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2019

Assembling the human resectosome on DNA curtains

Soniat, M. M., Myler, L. R. & Finkelstein, I. J., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 225-244 20 p. (Methods in Molecular Biology; vol. 1999).

Research output: Chapter in Book/Report/Conference proceedingChapter

DNA
Microfluidics
Double-Stranded DNA Breaks
Homologous Recombination
Maintenance

Desiccation tolerance assays for acinetobacter baumannii

Wang, X., Trent, M. S. & Davies, B. W., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 189-194 6 p. (Methods in Molecular Biology; vol. 1946).

Research output: Chapter in Book/Report/Conference proceedingChapter

Acinetobacter baumannii
Desiccation
Delivery of Health Care
Equipment and Supplies

Isolation of lipid cell envelope components from acinetobacter baumannii

Powers, M. J., Herrera, C. M., Tucker, A. T., Davies, B. W. & Trent, M. S., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 233-252 20 p. (Methods in Molecular Biology; vol. 1946).

Research output: Chapter in Book/Report/Conference proceedingChapter

Acinetobacter baumannii
Acinetobacter
Cellular Structures
Lipids
Microbiological Techniques

Purification and biophysical characterization of the mre11-Rad50-Nbs1 complex

Myler, L. R., Soniat, M. M., Zhang, X., Deshpande, R. A., Paull, T. T. & Finkelstein, I. J., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 269-287 19 p. (Methods in Molecular Biology; vol. 2004).

Research output: Chapter in Book/Report/Conference proceedingChapter

Biophysics
Exonucleases
Double-Stranded DNA Breaks
DNA
Telomere

RecET-mediated recombineering in acinetobacter baumannii

Tucker, A. T., Powers, M. J., Trent, M. S. & Davies, B. W., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 107-113 7 p. (Methods in Molecular Biology; vol. 1946).

Research output: Chapter in Book/Report/Conference proceedingChapter

Acinetobacter baumannii
Genetic Engineering
Genetic Recombination
Genome
Desiccation

Sortase-mediated fluorescent labeling of CRISPR complexes

Dillard, K. E., Schaub, J. M., Brown, M. W., Saifuddin, F. A., Xiao, Y., Hernandez, E., Dahlhauser, S. D., Anslyn, E. V., Ke, A. & Finkelstein, I. J., Jan 1 2019, Methods in Enzymology. Bailey, S. (ed.). Academic Press Inc., p. 43-59 17 p. (Methods in Enzymology; vol. 616).

Research output: Chapter in Book/Report/Conference proceedingChapter

Clustered Regularly Interspaced Short Palindromic Repeats
Labeling
Proteins
Imaging techniques
Molecules
2018
2 Citations (Scopus)

Scalable in vitro proteasome activity assay

Singh Gautam, A. K., Martinez-Fonts, K. & Matouschek, A. T., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 321-341 21 p. (Methods in Molecular Biology; vol. 1844).

Research output: Chapter in Book/Report/Conference proceedingChapter

Proteasome Endopeptidase Complex
In Vitro Techniques
Proteins
2017

Inserting Extrahelical Structures into Long DNA Substrates for Single-Molecule Studies of DNA Mismatch Repair

Brown, M. W., de la Torre, A. & Finkelstein, I. J., Jan 1 2017, Methods in Enzymology. Academic Press Inc., p. 221-238 18 p. (Methods in Enzymology; vol. 582).

Research output: Chapter in Book/Report/Conference proceedingChapter

DNA Mismatch Repair
Repair
Molecules
DNA
Substrates
7 Citations (Scopus)

Next-Generation DNA Curtains for Single-Molecule Studies of Homologous Recombination

Soniat, M. M., Myler, L. R., Schaub, J. M., Kim, Y., Gallardo, I. F. & Finkelstein, I. J., Jan 1 2017, Methods in Enzymology. Academic Press Inc., p. 259-281 23 p. (Methods in Enzymology; vol. 592).

Research output: Chapter in Book/Report/Conference proceedingChapter

Homologous Recombination
Molecules
DNA
Facilitated Diffusion
Imaging techniques
1 Citation (Scopus)

Origins: A brief account of the ancestry of circadian biology

Schwartz, W. & Daan, S., Jan 1 2017, Biological Timekeeping: Clocks, Rhythms and Behaviour. Springer (India) Private Ltd., p. 3-22 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Metaphor
Circadian Rhythm
molecular genetics
circadian rhythm
genetic improvement
2016

A nonparametric bayesian model for nested clustering

Lee, J., Mueller, P., Zhu, Y. & Ji, Y., Jan 1 2016, Methods in Molecular Biology. Humana Press Inc., p. 129-141 13 p. (Methods in Molecular Biology; vol. 1362).

Research output: Chapter in Book/Report/Conference proceedingChapter

Cluster Analysis
Proteins
Activation Analysis

Assessment of body composition and fat distribution in infants, children, and adolescents

Widen, E. & Gallagher, D., Oct 14 2016, Childhood Obesity: Causes, Consequences, and Intervention Approaches. CRC Press, p. 45-55 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Body Fat Distribution
Body Composition
4 Citations (Scopus)

Bin-based estimation of the amount of effort for embedded software development projects with support vector machines

Iwata, K., Liebman, E., Stone, P. H., Nakashima, T., Anan, Y. & Ishii, N., Jan 1 2016, Studies in Computational Intelligence. Springer Verlag, p. 157-169 13 p. (Studies in Computational Intelligence; vol. 614).

Research output: Chapter in Book/Report/Conference proceedingChapter

Embedded software
Bins
Support vector machines
Software engineering
Experiments
2 Citations (Scopus)

CHAPTER 2: 11B NMR and its uses in structural characterization of boronic acids and boronate esters

Metola, P., Chapin, B. M. & Anslyn, E. V., Jan 1 2016, Porous Polymers: Design, Synthesis and Applications. Fossey, J. S., James, T. D. & Li, M. (eds.). 16 ed. Royal Society of Chemistry, p. 44-60 17 p. (Monographs in Supramolecular Chemistry; vol. 2016-January, no. 16).

Research output: Chapter in Book/Report/Conference proceedingChapter

Boronic Acids
Boron
Chemical shift
Esters
Nuclear magnetic resonance
21 Citations (Scopus)

Genes and Alcohol Consumption: Studies with Mutant Mice

Mayfield, J., Arends, M. A., Harris, R. A. & Blednov, Y. A., Jan 1 2016, International Review of Neurobiology. Academic Press Inc., p. 293-355 63 p. (International Review of Neurobiology; vol. 126).

Research output: Chapter in Book/Report/Conference proceedingChapter

Alcohol Drinking
Drinking
Self Administration
Genes
Alcohols

High school mathematics in Texas: Freedom and shackles

Marder, M. P., Jan 1 2016, Education Policy Perils: Tackling Tough Issues. Taylor and Francis, p. 134-156 23 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

school graduation
mathematics
science
art studies
school
2015
2 Citations (Scopus)

A Bayesian nonparametric causal model for regression discontinuity designs

Karabatsos, G. & Walker, S. G., Jan 1 2015, Nonparametric Bayesian Inference in Biostatistics. Springer International Publishing, p. 403-422 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Causal Model
Bayesian Nonparametrics
Nonparametric Model
Linear Models
Discontinuity
14 Citations (Scopus)

An observational guide to identifying pseudobulges and classical bulges in disc galaxies

Fisher, D. B. & Drory, N., Oct 25 2015, Galactic Bulges. Springer International Publishing, Vol. 418. p. 41-75 35 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

disk galaxies
lists
star formation
kinematics
gases
20 Citations (Scopus)

Autonomous intersection management for semiautonomous vehicles

Au, T. C., Zhang, S. & Stone, P. H., Aug 20 2015, Routledge Handbook of Transportation. Taylor and Francis Inc., p. 88-104 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

management

Bayesian inference for latent stepping and ramping models of spike train data

Latimer, K. W., Huk, A. C. & Pillow, J. W., Jan 1 2015, Advanced State Space Methods for Neural and Clinical Data. Cambridge University Press, p. 160-185 26 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Decision making
Brain
Neurons
Animals
State space methods
1 Citation (Scopus)

Bayesian nonparametric models

Mueller, P. & Mitra, R., Jan 1 2015, Nonparametric Bayesian Inference in Biostatistics. Springer International Publishing, p. 3-14 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biostatistics
Bayesian Nonparametrics
Dirichlet Process
Nonparametric Model
Bayesian Model
4 Citations (Scopus)

Bayesian nonparametrics for missing data in longitudinal clinical trials

Daniels, M. & Linero, A. R., Jan 1 2015, Nonparametric Bayesian Inference in Biostatistics. Springer International Publishing, p. 423-446 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Bayesian Nonparametrics
Bayes Theorem
Missing Data
Clinical Trials
Sensitivity analysis

Biomarker-driven adaptive design

Xu, Y., Ji, Y. & Mueller, P., Jan 1 2015, Nonparametric Bayesian Inference in Biostatistics. Springer International Publishing, p. 311-326 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Adaptive Design
Biomarkers
biomarkers
Bayesian Model
Model-based
4 Citations (Scopus)

Centric and Araphid Diatoms

Kociolek, J. P., Theriot, E. C., Williams, D. M., Julius, M., Stoermer, E. F. & Kingston, J. C., Jun 26 2015, Freshwater Algae of North America: Ecology and Classification. Elsevier Inc., p. 653-708 56 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Diatoms
Bacillariophyceae
Fresh Water
algae
diatom
2 Citations (Scopus)

CHAPTER 7: Metal-organic frameworks as chemical sensors

Waggoner, N. W., Bohnsack, A. M. & Humphrey, S. M., Jan 1 2015, RSC Smart Materials. Hardy, J. G. & Schacher, F. H. (eds.). 15 ed. Royal Society of Chemistry, p. 192-245 54 p. (RSC Smart Materials; vol. 2015-January, no. 15).

Research output: Chapter in Book/Report/Conference proceedingChapter

Chemical sensors
Metals
Microporous materials
Food safety
Lanthanoid Series Elements
3 Citations (Scopus)

Design, synthesis, and application of spinach molecular beacons triggered by strand displacement

Bhadra, S. & Ellington, A., Jan 1 2015, Methods in Enzymology. Academic Press Inc., p. 215-249 35 p. (Methods in Enzymology; vol. 550).

Research output: Chapter in Book/Report/Conference proceedingChapter

Spinacia oleracea
Amplification
Conformations
Nucleic acid sequences
Nucleotide Aptamers
14 Citations (Scopus)

Elliptical galaxies and bulges of disc galaxies: Summary of progress and outstanding issues

Kormendy, J., Oct 25 2015, Galactic Bulges. Springer International Publishing, Vol. 418. p. 431-477 47 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

disk galaxies
elliptical galaxies
galaxies
star formation
ring structures

Estimating latent cell subpopulations with Bayesian feature allocation models

Ji, Y., Sengupta, S., Lee, J., Mueller, P. & Gulukota, K., Jan 1 2015, Nonparametric Bayesian Inference in Biostatistics. Springer International Publishing, p. 77-96 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Tumors
Tumor
neoplasms
Cell
mutation
2 Citations (Scopus)

Intentional photos from an unintentional photographer: Detecting snap points in egocentric video with aweb photo prior

Xiong, B. & Grauman, K. L., Jan 1 2015, Mobile Cloud Visual Media Computing: From Interaction to Service. Springer International Publishing, p. 85-111 27 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Cameras
Mobile robots
Chemical analysis
Object detection

Key points to consider when studying RNA remodeling by proteins

Luke Ward, W. & Russell, R., Jan 12 2015, RNA Remodeling Proteins: Methods and Protocols. Springer New York, p. 1-16 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

RNA
Proteins
Adenosine Triphosphate
RNA Probes
Protein Folding

Metabolomics, Bioactives, and Cancer

Sweeney, S. R., DiGiovanni, J. & Tiziani, S., Oct 5 2015, Genomics, Proteomics and Metabolomics in Nutraceuticals and Functional Foods: Second Edition. Wiley Blackwell, p. 365-378 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Metabolomics
metabolomics
neoplasms
Research
Neoplasms

Motion Perception

Huk, A. C. & Joo, S. J., Feb 14 2015, Anatomy and Physiology, Systems. Elsevier Inc., Vol. 2. p. 507-510 4 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Motion Perception

Neuroimaging of Economic Decision-Making

Malecek, N. J. & Schonberg, T., Feb 14 2015, Social Cognitive Neuroscience, Cognitive Neuroscience, Clinical Brain Mapping. Elsevier Inc., Vol. 3. p. 409-415 7 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Neuroimaging
Decision Making
Economics
1 Citation (Scopus)

Profinite properties of discrete groups

Reid, A. W., Jan 1 2015, Groups St Andrews 2013. Cambridge University Press, p. 73-104 32 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Discrete Group
Residually Finite
Completion
Profinite Groups
Nilpotent Group
8 Citations (Scopus)
Parent-Child Relations
parent-child relationship
parents
Parents
Social Environment
8 Citations (Scopus)

Relationships between adults and parents in Asia

Kim, K., Cheng, Y. P., Zarit, S. H. & Fingerman, K. L., Jan 1 2015, Successful Aging: Asian Perspectives. Springer Netherlands, p. 101-122 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Parent-Child Relations
parent-child relationship
parents
Parents
Social Environment
2 Citations (Scopus)

Spatial species sampling and product partition models

Jo, S., Lee, J., Page, G., Quintana, F., Trippa, L. & Mueller, P., Jan 1 2015, Nonparametric Bayesian Inference in Biostatistics. Springer International Publishing, p. 359-376 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Chile
Diagnostic Imaging
Ecology
Epidemiology
Partition
3 Citations (Scopus)

Stability results for the brunn-minkowski inequality

Figalli, A., Jan 1 2015, Colloquium de Giorgi 2013 and 2014. Scuola Normale Superiore, p. 119-127 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Brunn-Minkowski Inequality
Isoperimetric Problem
Convex Geometry
Sumsets
Lebesgue Measure

Studying molecular changes during gravity perception and response in a single cell

Cannon, A. E., Salmi, M. L., Bushart, T. J. & Roux, S. J., May 15 2015, Plant Gravitropism: Methods and Protocols. Springer New York, p. 199-207 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Gravity Sensing
Spores
gravity
spores
Gravitation
5 Citations (Scopus)

System-Wide Monitoring Program of the National Estuarine Research Reserve System: Research and Monitoring to Address Coastal Management Issues

Buskey, E. J., Bundy, M., Ferner, M. C., Porter, D. E., Reay, W. G., Smith, E. & Trueblood, D., Jun 23 2015, Coastal Ocean Observing Systems. Elsevier Inc., p. 392-415 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

coastal zone management
estuarine ecosystem
monitoring
climate change
long-term change
3 Citations (Scopus)

The betalain secondary metabolic network

Hatlestad, G. J. & Lloyd, A. M., Jan 1 2015, Pigments in Fruits and Vegetables. Springer New York, p. 127-140 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Betalains
betalains
Metabolic Networks and Pathways
dihydroxyphenylalanine
Dihydroxyphenylalanine
2 Citations (Scopus)

Vascular Molecular Embryology

Vokes, S. A., Jan 1 2015, PanVascular Medicine, Second Edition. Springer Berlin Heidelberg, p. 27-51 25 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Embryology
Blood Vessels
Genes
Molecular Probes
Cardiovascular system
2014
2 Citations (Scopus)

Alcohol and the Brain: An Epigenetic Viewpoint

Marballi, K., Ponomarev, I., Mayfield, R. D. & Harris, R. A., Jan 1 2014, Neurobiology of Alcohol Dependence. Elsevier Inc., p. 349-358 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Epigenomics
Alcoholism
Alcohols
Brain
Gene Expression
3 Citations (Scopus)

Alcohol and the Nervous System

Messing, R. O., Jan 1 2014, Aminoff's Neurology and General Medicine: Fifth Edition. Elsevier Inc., p. 713-724 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Nervous System
Alcohols
Ethanol
Nervous System Diseases
Alcohol-Related Disorders

Applying Super-Resolution Imaging Techniques to Problems in Single-Molecule SERS

Titus, E. J. & Willets, K. A., Mar 31 2014, Frontiers of Surface-Enhanced Raman Scattering: Single Nanoparticles and Single Cells. Wiley Blackwell, Vol. 9781118359020. p. 193-217 25 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Raman scattering
Imaging techniques
Molecules
Optical microscopy
14 Citations (Scopus)

Cerebellar mechanisms of learning and plasticity revealed by delay eyelid conditioning

Mauk, M., Li, W., Khilkevich, A. & Halverson, H. E., Jan 1 2014, International Review of Neurobiology. Academic Press Inc., p. 21-37 17 p. (International Review of Neurobiology; vol. 117).

Research output: Chapter in Book/Report/Conference proceedingChapter

Eyelid Conditioning
Cerebellum
Learning
Smooth Pursuit
Vestibulo-Ocular Reflex
3 Citations (Scopus)

Decremental all-pairs ALL shortest paths and betweenness centrality

Nasre, M., Pontecorvi, M. & Ramachandran, V., Jan 1 2014, Algorithms and Computation - 25th International Symposium, ISAAC 2014, Proceedings. Ahn, H-K. & Shin, C-S. (eds.). Springer Verlag, p. 766-778 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8889).

Research output: Chapter in Book/Report/Conference proceedingChapter

Betweenness
Centrality
Shortest path
Vertex of a graph
Graph in graph theory
1 Citation (Scopus)

High-throughput RNA-Seq for allelic or locus-specific expression analysis in Arabidopsis-related species, hybrids, and allotetraploids

Ng, D. W. K., Shi, X., Nah, G. & Chen, Z. J., Jan 1 2014, Plant Epigenetics and Epigenomics: Methods and Protocols. Humana Press Inc., p. 33-48 16 p. (Methods in Molecular Biology; vol. 1112).

Research output: Chapter in Book/Report/Conference proceedingChapter

RNA Sequence Analysis
High-Throughput Nucleotide Sequencing
Arabidopsis
Transcriptome
Gene Expression

High-throughput RNA-Seq for allelic or locus-specific expression analysis in Arabidopsis-related species, hybrids, and allotetraploids

Ng, D. W. K., Shi, X., Nah, G. & Chen, Z. J., Jan 1 2014, Methods in Molecular Biology. p. 33-48 16 p. (Methods in Molecular Biology; vol. 1112).

Research output: Chapter in Book/Report/Conference proceedingChapter

RNA Sequence Analysis
High-Throughput Nucleotide Sequencing
Arabidopsis
Transcriptome
Gene Expression
7 Citations (Scopus)

Hölder regularity for generalized master equations with Rough Kernels

Caffarelli, L. A. & Silvestre, L., Jan 5 2014, Advances in Analysis: The Legacy of Elias M. Stein. Princeton University Press, Vol. 9781400848935. p. 63-83 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Rough Kernel
Hölder Regularity
Master Equation
Generalized Equation