Research Output 1955 2020

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Conference article
2019

Explaining deep classification of time-series data with learned prototypes

Gee, A. H., Garcia-Olano, D., Ghosh, J. & Paydarfar, D., Jan 1 2019, In : CEUR Workshop Proceedings. 2429, p. 15-22 8 p.

Research output: Contribution to journalConference article

Time series
Electrocardiography
Decision making
Deep learning
2018

The influence of an externship on BME predoctoral students' career development

Savoy, J. N., Markey, M. K. & Rylander, H. G., Jun 23 2018, In : ASEE Annual Conference and Exposition, Conference Proceedings. 2018-June

Research output: Contribution to journalConference article

Students
Planning
Biomedical engineering
Supervisory personnel
Decision making
2017
1 Citation (Scopus)

An algorithm for risk stratification of preterm infants

Apurupa Amperayani, V. N. S., Indic, P., Travers, C. P., Barbieri, R., Paydarfar, D. & Ambalavanan, N., Jan 1 2017, In : Computing in Cardiology. 44, p. 1-4 4 p.

Research output: Contribution to journalConference article

Premature Infants
Heart Rate
Bradycardia
Oxygen
Intensive care units

Characterizing intra-urban air quality gradients with a spatially-distributed network

Zimmerman, N., Robinson, E., Li, H., Ellis, A., Subramanian, R., Robinson, A., Apte, J. & Presto, A., Jan 1 2017, In : Proceedings of the Air and Waste Management Association's Annual Conference and Exhibition, AWMA.

Research output: Contribution to journalConference article

Air quality
air quality
Monitoring
monitoring
urban site
Communication
Students
Biomedical engineering
Accreditation
Industry

Intra-urban spatial and temporal variations in fine particle composition, number, and sources

Presto, A., Zimmerman, N., Gu, P., Li, H. Z., Subramanian, R., Robinson, A. & Apte, J., Jan 1 2017, In : Proceedings of the Air and Waste Management Association's Annual Conference and Exhibition, AWMA.

Research output: Contribution to journalConference article

temporal variation
spatial variation
Chemical analysis
particle
8 Citations (Scopus)

Mind mapping: Using everyday language to explore social & psychological processes

Pennebaker, J. W., Jan 1 2017, In : Procedia Computer Science. 118, p. 100-107 8 p.

Research output: Contribution to journalConference article

Computer science
Communication
2016
4 Citations (Scopus)

Generalized correspondence-LDA models (GC-LDA) for identifying functional regions in the brain

Rubin, T. N., Koyejo, O., Jones, M. N. & Yarkoni, T., Jan 1 2016, In : Advances in Neural Information Processing Systems. p. 1126-1134 9 p.

Research output: Contribution to journalConference article

Brain
Neuroimaging
Probability distributions
Linguistics
2014
1 Citation (Scopus)

Designing topology-aware communication schedules for alltoall operations in large InfiniBand clusters

Subramoni, H., Kandalla, K., Jose, J., Tomko, K., Schulz, K., Pekurovsky, D. & Panda, D. K., Nov 13 2014, In : Proceedings of the International Conference on Parallel Processing. 2014-November, November, p. 231-240 10 p., 6957232.

Research output: Contribution to journalConference article

InfiniBand
Schedule
Topology
Contention
Fast Fourier transforms
2013
Pedestrian safety
pedestrian
collision
Traffic signals
safety
2012
8 Citations (Scopus)

Integration of a neuroimaging processing pipeline into a pan-canadian computing grid

Lavoie-Courchesne, S., Rioux, P., Chouinard-Decorte, F., Sherif, T., Rousseau, M. E., Das, S., Adalat, R., Doyon, J., Craddock, C., Margulies, D., Chu, C., Lyttelton, O., Evans, A. C. & Bellec, P., Jan 1 2012, In : Journal of Physics: Conference Series. 341, 1, 012032.

Research output: Contribution to journalConference article

platforms
preprocessing
magnetic resonance
resources
2011
1 Citation (Scopus)

Aligning research resource and researcher representation: The eagle-i and VIVO use case

Mitchell, S., Torniai, C., Lowe, B., Corson-Rikert, J., Wilson, M., Ahmed, M., Chen, S., Ding, Y., Rejack, N. & Haendel, M., Dec 1 2011, In : CEUR Workshop Proceedings. 833, p. 260-262 3 p.

Research output: Contribution to journalConference article

Data integration
Interoperability
Information systems
Display devices

pH-induced flocculation process for harvesting microalgae from water

Choi, J., Kinney, K. A., Katz, L. E. & Chen, E., Aug 25 2011, In : ACS National Meeting Book of Abstracts.

Research output: Contribution to journalConference article

Flocculation
Algae
Water
Recovery
Biofuels
2010

New experiments with antiprotons

Fermilab pbar Collaboration, Jan 1 2010, In : Proceedings of Science. 120

Research output: Contribution to journalConference article

antiprotons
CP violation
antimatter
physics
interferometers

Optical trapping and cooling of glass microspheres

Li, T., Kheifets, S., Medellin, D. & Raizen, M. G., Dec 1 2010, In : Optics InfoBase Conference Papers.

Research output: Contribution to journalConference article

Microspheres
trapping
Cooling
cooling
Glass
2009

Beyond anecdotes: How to assess what goes on in your classes

Schmidt, K., Markey, M. & Park, W., Jan 1 2009, In : ASEE Annual Conference and Exposition, Conference Proceedings.

Research output: Contribution to journalConference article

Teaching
Social sciences
14 Citations (Scopus)

Biological and metal contaminants in HVAC filter dust

Noris, F., Siegel, J. A. & Kinney, K., Dec 1 2009, In : ASHRAE Transactions. 115 PART 2, p. 484-491 8 p.

Research output: Contribution to journalConference article

Heavy metals
Dust
Impurities
Bacteria
Metals

Changes in morphology and optical properties of sclera due to hyperosmotic agent

Zaman, R. T., Rylander, H. G., Rajaram, N., Wang, T., Asokan, N., Tunnell, J. W. & Welch, A. J., May 5 2009, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 7175, 71750D.

Research output: Contribution to journalConference article

Sclera
glycerols
Glycerol
Optical properties
optical properties
5 Citations (Scopus)

In vivo determination of optical properties and fluorophore characteristics of non-melanoma skin cancer

Rajaram, N., Kovacic, D., Migden, M. F., Reichenberg, J., Nguyen, T. H. & Tunnell, J., Jun 8 2009, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 7161, 716102.

Research output: Contribution to journalConference article

Fluorophores
Skin Neoplasms
Skin
Optical properties
Fluorescence
1 Citation (Scopus)

Narrow band imaging of tumors using gold nanoshells

Puvanakrishnan, P., Park, J., Diagaradjane, P., Schwartz, J. A., Coleman, C. L., Gill-Sharp, K. L., Sang, K. L., Payne, J. D., Krishnan, S. & Tunnell, J., Jun 9 2009, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 7169, 716912.

Research output: Contribution to journalConference article

Nanoshells
Narrow Band Imaging
Gold
narrowband
Tumors
4 Citations (Scopus)

Ultrasound and photoacoustic imaging to monitor vascular growth in tissue engineered constructs

Yun Nam, S., Mallidi, S., Zhang, G., Suggs, L. & Emelianov, S., Jun 1 2009, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 7179, 71790G.

Research output: Contribution to journalConference article

Photoacoustic effect
Blood Vessels
Ultrasonography
Ultrasonics
Transducers
2008

Green building materials: Indoor ozone removal

Hoang, C. P., Kinney, K. & Corsi, R. L., Dec 1 2008, In : IAQ Conference.

Research output: Contribution to journalConference article

Ozone
Ceilings
Triticum
Tile
Helianthus
3 Citations (Scopus)

Integrating social tagging data: Upper tag ontology (UTO)

Ding, Y., Toma, I., Fried, M., Kang, S. J. & Yan, Z., Dec 1 2008, In : Conference Proceedings - IEEE International Conference on Systems, Man and Cybernetics. p. 460-466 7 p., 4811319.

Research output: Contribution to journalConference article

Ontology
5 Citations (Scopus)

Student and teacher regulation of learning in technology-enhanced science instruction

Corliss, S. & Spitulnik, M. W., Dec 1 2008, In : Computer-Supported Collaborative Learning Conference, CSCL. PART 1, p. 167-174 8 p.

Research output: Contribution to journalConference article

Students
instruction
regulation
teacher
science
2007

EASAIER semantic music retrieval portal

Luger, M., Ding, Y., Scharffe, F., Duan, R. & Yan, Z., Dec 1 2007, In : CEUR Workshop Proceedings. 300, p. 13-14 2 p.

Research output: Contribution to journalConference article

Semantic Web
Semantics
Acoustic waves
Metadata
Ontology
3 Citations (Scopus)

Towards correspondence patterns for ontology mediation

Scharffe, F., Ding, Y. & Fensel, D., Dec 1 2007, In : CEUR Workshop Proceedings. 304

Research output: Contribution to journalConference article

Ontology
2006

Avoiding deceptive annotations in the Semantic Web

Ding, Y., Embley, D., Ding, Y. & Shafiq, O., Dec 1 2006, In : CEUR Workshop Proceedings. 209, p. 4P

Research output: Contribution to journalConference article

Semantic Web
Semantics
Ontology
Profitability
Specifications
2005
9 Citations (Scopus)

Classification of mammographic lesions into BI-RADS™ shape categories using the Beamlet transform

Sampat, M. P., Bovik, A. C. & Markey, M. K., Aug 25 2005, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 5747, I, p. 16-25 10 p., 03.

Research output: Contribution to journalConference article

classifying
lesions
Mammography
Image analysis
Classifiers
19 Citations (Scopus)

Comparison of three-class classification performance metrics: A case study in breast cancer CAD

Patel, A. C. & Markey, M. K., Sep 19 2005, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 5749, p. 581-589 9 p., 64.

Research output: Contribution to journalConference article

Operating Characteristics
Performance Metrics
computer aided design
Breast Cancer
breast
Bioreactors
Kinetic parameters
toluene
bioreactor
Toluene
4 Citations (Scopus)

Developing an instructional technology scaffold for reinforcing learning of probability and statistics

Markey, M. K., Schmidt, K. J. & Saldivar, M. G., Jan 1 2005, In : ASEE Annual Conference and Exposition, Conference Proceedings. p. 4121-4144 24 p.

Research output: Contribution to journalConference article

Scaffolds
Statistics
Students
Biomedical engineering
Remote control
Biofilters
Bioreactors
bioreactor
effect
removal
43 Citations (Scopus)

Evidence based detection of spiculated masses and architectural distortions

Sampat, M. P., Whitman, G. J., Markey, M. & Bovik, A. C., Aug 25 2005, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 5747, I, p. 26-37 12 p., 04.

Research output: Contribution to journalConference article

filters
abnormalities
Radon
image filters
linear filters
1 Citation (Scopus)

GLUE: Sticking with engineering through undergraduate research

Berry, T. S. & Kinney, K. A., Jan 1 2005, In : ASEE Annual Conference and Exposition, Conference Proceedings. p. 6955-6965 11 p.

Research output: Contribution to journalConference article

Education
Students
Feedback
4 Citations (Scopus)

Issues in assessing multi-institutional performance of BI-RADS-based CAD systems

Markey, M. K. & Lo, J. Y., Aug 25 2005, In : Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 5747, II, p. 858-865 8 p., 89.

Research output: Contribution to journalConference article

Computer aided diagnosis
data systems
Information Systems
breast
Breast
2004
5 Citations (Scopus)

A structural constitutive model for the native pulmonary valve

Sacks, M. S., Lam, T. V. & Mayer, J. E., Dec 1 2004, In : Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings. 26 V, p. 3734-3736 3 p.

Research output: Contribution to journalConference article

Pulmonary Valve
Structural Models
Constitutive models
Tissue
Swine
27 Citations (Scopus)

Bayesian networks of BI-RADS™ descriptors for breast lesion Classification

Fischer, E. A., Lo, J. Y. & Markey, M. K., Dec 1 2004, In : Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings. 26 IV, p. 3031-3034 4 p.

Research output: Contribution to journalConference article

Bayesian networks
Breast
Biopsy
Calcinosis
Probability Learning
3 Citations (Scopus)

Biotrickling filter: Hydrodynamics, performance characteristics and biofilm changes

Paca, J., Klapkova, E., Halecky, M., Maryska, M. & Kinney, K. A., Dec 1 2004, In : Proceedings of the Air and Waste Management Association's Annual Meeting and Exhibition. p. 1421-1433 13 p.

Research output: Contribution to journalConference article

Biofilms
Xylene
Toluene
Hydrodynamics
Aromatic hydrocarbons

Biotrickling filter: Hydrodynamics, performance characteristics and biofilm changes

Paca, J., Klapkova, E., Halecky, M., Maryska, M. & Kinney, K., Dec 1 2004, In : Proceedings of the Air and Waste Management Association's Annual Conference and Exhibition, AWMA.

Research output: Contribution to journalConference article

Biofilms
toluene
biofilm
Toluene
Hydrodynamics

Creation of atomic Fock states using a quantum tweezer

Schreck, F., Hanssen, J. L., Meyrath, T. P., Chuu, C. S., Dudarev, A. M. & Raizen, M. G., Jan 1 2004, In : OSA Trends in Optics and Photonics Series. 97, 1 p.

Research output: Contribution to journalConference article

Atoms
3 Citations (Scopus)

Development and 3D finite elment implementation of a multiaxial constitutive relation for abdominal aortic aneurysms

Geest, J. V., Bohra, A., Sun, W., Martino, E. D., Sacks, M. S. & Vorp, D., Jan 1 2004, In : Advances in Bioengineering, BED. p. 221-222 2 p., IMECE2004-59643.

Research output: Contribution to journalConference article

Maximum principle
4 Citations (Scopus)

In-class demonstrations to make electrical circuits easier to understand

Pearce, J. A., Schmidt, K. J. & Beretvas, S. N., Oct 25 2004, In : ASEE Annual Conference Proceedings. p. 7099-7108 10 p.

Research output: Contribution to journalConference article

Demonstrations
Students
Networks (circuits)
Set theory
Leakage currents
3 Citations (Scopus)

Molecular design and cellular response of novel intelligent mucoadhesive carriers for oral delivery of proteins

Peppas, N., Dec 1 2004, In : Materials Research Society Symposium Proceedings. EXS, 1, p. 381-392 12 p., I1.1.

Research output: Contribution to journalConference article

delivery
Polymers
swelling
proteins
Proteins

Quantum cascade laser spectrometer for trace-gas detection of exhaled Carbonyl Sulfide

Wysocki, G., So, S., McCurdy, M., Roller, C., Weidmann, D., Kosterev, A. A., Frantz, J. P., Curl, R. F. & Tittel, F. K., Jan 1 2004, In : OSA Trends in Optics and Photonics Series. 96 A, 1 p.

Research output: Contribution to journalConference article

Quantum cascade lasers
Transplants
Chemical sensors
Spectrometers
Carbon dioxide

Validation of the geometric optics approximation for microwave antenna analysis with an inhomogeneous plasma plume

Garcia, A., Hallock, G. A. & Wiley, J. C., Dec 1 2004, In : IEEE International Conference on Plasma Science. 1 p., 3P41.

Research output: Contribution to journalConference article

microwave antennas
Microwave antennas
cross polarization
directivity
communication satellites

Viscoelastic behavior of heart valve tissues under biaxial stretch

Sacks, M. S., Grashow, J. & Yoganathan, A. P., Jan 1 2004, In : Advances in Bioengineering, BED. p. 231-232 2 p., IMECE2004-59731.

Research output: Contribution to journalConference article

Strain rate
Tissue
Constitutive models
Stretching
Mechanical properties
2003
1 Citation (Scopus)

Active biaxial mechanical properties of bladder wall tissue

Nagatomi, J., Chancellor, M. B. & Sacks, M. S., Jan 1 2003, In : American Society of Mechanical Engineers, Bioengineering Division (Publication) BED. 55, p. 341-342 2 p.

Research output: Contribution to journalConference article

Tissue
Mechanical properties
Muscle
Strain rate
Testing
27 Citations (Scopus)

Computer-aided classification of breast microcalcification clusters: Merging of features from image processing and radiologists

Lo, J. Y., Gavrielides, M., Markey, M. & Jesneck, J. L., Sep 15 2003, In : Proceedings of SPIE - The International Society for Optical Engineering. 5032 II, p. 882-889 8 p.

Research output: Contribution to journalConference article

Microcalcifications
Merging
breast
image processing
Image Processing
1 Citation (Scopus)

Environmental sampling and analysis: A laboratory course for 21 st century environmental engineers

Katz, L. E., Liljestrand, H. M. & Kinney, K., Dec 1 2003, In : ASEE Annual Conference Proceedings. p. 2263-2270 8 p.

Research output: Contribution to journalConference article

Sampling
Engineers
Water treatment
Potable water
Wastewater treatment

Fiber kinematics of small intestinal submucosa subjected to biaxial stretch

Gilbert, T. W., Grashow, J., Woo, S. L. Y., Chancellor, M. B. & Sacks, M. S., Jan 1 2003, In : American Society of Mechanical Engineers, Bioengineering Division (Publication) BED. 55, p. 323-324 2 p.

Research output: Contribution to journalConference article

Kinematics
Collagen
Fibers
Stretching
Tissue